1-DAV-202 Data Management 2023/24
Previously 2-INF-185 Data Source Integration

Materials · Introduction · Rules · Contact
· Grades from marked homeworks are on the server in file /grades/userid.txt
· Dates of project submission and oral exams:
Early: submit project May 24 9:00am, oral exams May 27 1:00pm (limit 5 students).
Otherwise submit project June 11, 9:00am, oral exams June 18 and 21 (estimated 9:00am-1:00pm, schedule will be published before exam).
Sign up for one the exam days in AIS before June 11.
Remedial exams will take place in the last week of the exam period. Beware, there will not be much time to prepare a better project. Projects should be submitted as homeworks to /submit/project.
· Cloud homework is due on May 20 9:00am.


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  • 16:31, 18 February 2021 Tvinar talk contribs created page Connecting from Windows (Created page with "== Connection through ssh == You can use ssh client available in Windows 10. On command line use: ssh <username>@vyuka.compbio.fmph.uniba.sk However, if you want more conf...")
  • 20:32, 17 February 2021 Brona talk contribs restored page HWperl (1 revision)
  • 20:31, 17 February 2021 Brona talk contribs deleted page HWperl
  • 16:06, 25 May 2020 Brona talk contribs created page Integrácia dátových zdrojov 2019/20 (Created page with "Website for 2019/20 * Kontakt * Úvod * Pravidlá * Projekt {| |- | 2019-02-20 || (TV) Introduction to Perl (basics, input processing) Lecture, H...")
  • 20:16, 29 April 2020 Brona talk contribs created page HWcloud (Created page with "<!-- NOTEX --> See also the lecture For both tasks, submit your source code and the result, when run on whole dataset (<tt>s3://idzbucket2</tt>). The code is expec...")
  • 20:16, 29 April 2020 Brona talk contribs created page Lcloud (Created page with "Today we will work with [https://aws.amazon.com/ Amazon Web Services] (AWS), which is a cloud computing platform. It allows highly parallel computation on large datasets. We w...")
  • 09:28, 23 April 2020 Brona talk contribs created page HWr2 (Created page with "==HWr2== <!-- NOTEX --> See also the current and the the previous lecture. * Do either tasks A,B,C (beginners) or B,C,D (more advanced). You can also do all f...")
  • 09:27, 23 April 2020 Brona talk contribs created page Lr2 (Created page with "<!-- NOTEX --> HWr2 <!-- /NOTEX --> The topic of this lecture are statistical tests in R. * Beginners in statistics: listen to lecture, then do tasks A, B, C * If you kno...")
  • 15:01, 15 April 2020 Brona talk contribs uploaded a new version of File:HW08-clusters.png
  • 11:26, 15 April 2020 Brona talk contribs uploaded a new version of File:HW08-heatmap.png
  • 20:52, 14 April 2020 Brona talk contribs created page Lr1 (Created page with "<!-- NOTEX --> HWr1 <!-- /NOTEX --> Program for this lecture: basics of R (applied to biology examples) * very short intro as a lecture * exercises have the form of a tut...")
  • 20:33, 14 April 2020 Brona talk contribs created page HWr1 (Created page with "<!-- NOTEX --> See also the lecture <!-- /NOTEX --> In this homework, try to read the text, execute given commands, potentially trying some small modifications. Then...")
  • 19:29, 31 March 2020 Brona talk contribs created page HWbioinf3 (Created page with "==HWbioinf3== <!-- NOTEX --> See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf3</tt> <!-- /NOTEX --> ===Input files=== Copy...")
  • 19:29, 31 March 2020 Brona talk contribs created page Lbioinf3 (Created page with "<!-- NOTEX --> HWbioinf3 <!-- /NOTEX --> ==Polymorphisms== * Individuals within species differ slightly in their genomes * Polymorphisms are genome variants which are rel...")
  • 19:24, 31 March 2020 Brona talk contribs created page HWjavascript (Created page with "<!-- NOTEX --> See the lecture <!-- /NOTEX --> '''General goal:''' Extend the user pages from the previous lecture with simple visualizations. <!-- NOTEX -->...")
  • 19:24, 31 March 2020 Brona talk contribs created page Ljavascript (Created page with "=Ljavascript= <!-- NOTEX --> HWjavascript <!-- /NOTEX --> In this lecture we will extend the website from the previous lecture with interactive visualizations written in...")
  • 11:14, 25 March 2020 Brona talk contribs created page HWbioinf2 (Created page with "<!-- NOTEX --> See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf2</tt> <!-- /NOTEX --> ===Input files=== Copy files from /ta...")
  • 11:14, 25 March 2020 Brona talk contribs created page Lbioinf2 (Created page with "<!-- NOTEX --> HWbioinf2 <!-- /NOTEX --> ==Eukaryotic gene structure== * Recall the Central dogma of molecular biology: the flow of genetic information from DNA to RNA to...")
  • 11:07, 25 March 2020 Brona talk contribs created page HWflask (Created page with "<!-- NOTEX --> See the lecture <!-- /NOTEX --> '''General goal:''' Build a simple website, which lists all crawled users and for each users has a page with simple...")
  • 11:06, 25 March 2020 Brona talk contribs created page Lflask (Created page with "=Lflask= <!-- NOTEX --> HWflask <!-- /NOTEX --> In this lecture, we will use Python to process user comments obtained in the previous lecture. * We will display informat...")
  • 13:24, 18 March 2020 Brona talk contribs created page HWbioinf1 (Created page with "<!-- NOTEX --> See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf1</tt> <!-- /NOTEX --> ===Task A: examine input files=== Cop...")
  • 13:23, 18 March 2020 Brona talk contribs created page Lbioinf1 (Created page with "<!-- NOTEX --> HWbioinf1 <!-- /NOTEX --> The next three lectures at targeted at the students in the Bioinformatics program and the goal is to get experience with several...")
  • 18:20, 12 March 2020 Brona talk contribs created page HWweb (Created page with "<!-- NOTEX --> See the lecture <!-- /NOTEX --> <!-- NOTEX --> Submit by copying requested files to <tt>/submit/web/username/</tt> <!-- /NOTEX --> '''General goal:''...")
  • 18:19, 12 March 2020 Brona talk contribs created page Lweb (Created page with "=Lweb= <!-- NOTEX --> HWweb <!-- /NOTEX --> In this lecture, we will extract information from a website using Python and existing Python libraries. We will store the resu...")
  • 13:22, 9 March 2020 Brona talk contribs created page HWpython (Created page with "==HWpython== <!-- NOTEX --> See also the lecture <!-- /NOTEX --> ===Introduction=== Choose one of the options: * Tasks A, B1, B2, C (recommended for beginners)...")
  • 13:21, 9 March 2020 Brona talk contribs created page Lpython (Created page with "<!-- NOTEX --> HWpython <!-- /NOTEX --> This lecture introduces the basics of the Python programming language. We will also cover basics of working with databases using t...")
  • 07:31, 5 March 2020 Brona talk contribs created page HWmake (Created page with "<!-- NOTEX --> See also the lecture <!-- /NOTEX --> ===Motivation: Building Phylogenetic Trees=== The task for today will be to build a phylogenetic tree of 9 mamm...")
  • 07:30, 5 March 2020 Brona talk contribs created page Lmake (Created page with "==Job Scheduling== * Some computing jobs take a lot of time: hours, days, weeks,... * We do not want to keep a command-line window open the whole time; therefore we run such...")
  • 12:29, 26 February 2020 Brona talk contribs created page HWbash (Created page with "<!-- NOTEX --> Lecture on Perl, Lecture on command-line tools <!-- /NOTEX --> * In this set of tasks, use command-line tools or one-liners in Perl, awk or...")
  • 12:27, 26 February 2020 Brona talk contribs created page Lbash (Created page with "=Lbash= <!-- NOTEX --> #HWbash <!-- /NOTEX --> This lecture introduces command-line tools and Perl one-liners. * We will do simple transformations of text files using co...")
  • 21:43, 19 February 2020 Brona talk contribs moved page Úvod to Introduction
  • 20:39, 19 February 2020 Brona talk contribs created page HWperl (Created page with "==HWperl== <!-- NOTEX --> See the lecture <!-- /NOTEX --> ===Files and setup=== We recommend creating a directory (folder) for this set of tasks: <syntaxhighlight l...")
  • 20:34, 19 February 2020 Brona talk contribs created page Lperl (Created page with "=Lperl= This lecture is a brief introduction to the Perl scripting language. More information can be found below (section #Sources of Perl-related information). We recomme...")
  • 21:04, 12 February 2020 Teacher talk contribs created page Projekt (Created page with "Cieľom projektu je vyskúšať si naučené zručnosti na konkrétnom projekte spracovania dát. Vašou úlohou je zohnať si dáta, tieto dáta analyzovať niektorými techn...")
  • 20:36, 12 February 2020 Brona talk contribs deleted page L08
  • 20:36, 12 February 2020 Brona talk contribs deleted page L09
  • 20:36, 12 February 2020 Brona talk contribs deleted page L10
  • 20:36, 12 February 2020 Brona talk contribs deleted page L10-2019
  • 20:36, 12 February 2020 Brona talk contribs deleted page L11
  • 20:36, 12 February 2020 Brona talk contribs deleted page L01
  • 20:36, 12 February 2020 Brona talk contribs deleted page L02
  • 20:36, 12 February 2020 Brona talk contribs deleted page L03
  • 20:36, 12 February 2020 Brona talk contribs deleted page L04
  • 20:36, 12 February 2020 Brona talk contribs deleted page L05bin
  • 20:36, 12 February 2020 Brona talk contribs deleted page L05inf
  • 20:36, 12 February 2020 Brona talk contribs deleted page L06
  • 20:36, 12 February 2020 Brona talk contribs deleted page L06bin
  • 20:36, 12 February 2020 Brona talk contribs deleted page L06inf
  • 20:36, 12 February 2020 Brona talk contribs deleted page L07bin
  • 20:36, 12 February 2020 Brona talk contribs deleted page L07inf
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