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17:20, 13 February 2022 Brona talk contribs deleted page Rules (content was: "==Grading== * Homeworks: 45% * Project proposal: 5% * Project and oral exam: 50% Grades: * A: 90 and more, B: 80...89, C: 70...79, D: 60...69, E: 50...59, FX: less than 50% You can get Fx if your oral exam is not satisfactory, even if you have sufficient points from other actitivities. ==Course format== * Every Monday two-hour class, we start with a short lecture. Then you start solving assigned tasks, which you complete as a homework assignment. * Online office hours on...")
17:20, 13 February 2022 Brona talk contribs deleted page Úvod (content was: "#REDIRECT Introduction", and the only contributor was "Brona" (talk))
17:19, 13 February 2022 Brona talk contribs deleted page Kontakt (content was: "#REDIRECT Contact", and the only contributor was "Brona" (talk))
17:19, 13 February 2022 Brona talk contribs deleted page Archív (content was: "#REDIRECT Archive", and the only contributor was "Brona" (talk))
17:19, 13 February 2022 Brona talk contribs moved page Archív to Archive
17:17, 13 February 2022 Brona talk contribs moved page Materiály to Materials
11:28, 13 February 2022 Brona talk contribs moved page Pravidlá to Rules
11:28, 13 February 2022 Brona talk contribs moved page Kontakt to Contact
10:26, 13 February 2022 Brona talk contribs moved page Integrácia dátových zdrojov 2020/21 to Data management 2020/21
10:15, 13 February 2022 Brona talk contribs created page Integrácia dátových zdrojov 2020/21 (Created page with "Here is a preliminary plan of lectures for this year (the topics and their order may change): {| |- | 2021-02-18 || (BB/TV) Introduction to Perl (basics, input processing) [...")
10:38, 23 March 2021 User account Balaz talk contribs was created by Brona talk contribs
16:31, 18 February 2021 Tvinar talk contribs created page Connecting from Windows (Created page with "== Connection through ssh == You can use ssh client available in Windows 10. On command line use: ssh <username>@vyuka.compbio.fmph.uniba.sk However, if you want more conf...")
20:32, 17 February 2021 Brona talk contribs restored page HWperl (1 revision)
20:31, 17 February 2021 Brona talk contribs deleted page HWperl
16:06, 25 May 2020 Brona talk contribs created page Integrácia dátových zdrojov 2019/20 (Created page with "Website for 2019/20 * Kontakt * Úvod * Pravidlá * Projekt {| |- | 2019-02-20 || (TV) Introduction to Perl (basics, input processing) Lecture, H...")
20:16, 29 April 2020 Brona talk contribs created page HWcloud (Created page with " See also the lecture For both tasks, submit your source code and the result, when run on whole dataset (<tt>s3://idzbucket2</tt>). The code is expec...")
20:16, 29 April 2020 Brona talk contribs created page Lcloud (Created page with "Today we will work with [https://aws.amazon.com/ Amazon Web Services] (AWS), which is a cloud computing platform. It allows highly parallel computation on large datasets. We w...")
09:28, 23 April 2020 Brona talk contribs created page HWr2 (Created page with "==HWr2==  See also the current and the the previous lecture. * Do either tasks A,B,C (beginners) or B,C,D (more advanced). You can also do all f...")
09:27, 23 April 2020 Brona talk contribs created page Lr2 (Created page with " HWr2  The topic of this lecture are statistical tests in R. * Beginners in statistics: listen to lecture, then do tasks A, B, C * If you kno...")
15:01, 15 April 2020 Brona talk contribs uploaded a new version of File:HW08-clusters.png
11:26, 15 April 2020 Brona talk contribs uploaded a new version of File:HW08-heatmap.png
20:52, 14 April 2020 Brona talk contribs created page Lr1 (Created page with " HWr1  Program for this lecture: basics of R (applied to biology examples) * very short intro as a lecture * exercises have the form of a tut...")
20:33, 14 April 2020 Brona talk contribs created page HWr1 (Created page with " See also the lecture  In this homework, try to read the text, execute given commands, potentially trying some small modifications. Then...")
19:29, 31 March 2020 Brona talk contribs created page HWbioinf3 (Created page with "==HWbioinf3==  See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf3</tt>  ===Input files=== Copy...")
19:29, 31 March 2020 Brona talk contribs created page Lbioinf3 (Created page with " HWbioinf3  ==Polymorphisms== * Individuals within species differ slightly in their genomes * Polymorphisms are genome variants which are rel...")
19:24, 31 March 2020 Brona talk contribs created page HWjavascript (Created page with " See the lecture  '''General goal:''' Extend the user pages from the previous lecture with simple visualizations. ...")
19:24, 31 March 2020 Brona talk contribs created page Ljavascript (Created page with "=Ljavascript=  HWjavascript  In this lecture we will extend the website from the previous lecture with interactive visualizations written in...")
11:14, 25 March 2020 Brona talk contribs created page HWbioinf2 (Created page with " See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf2</tt>  ===Input files=== Copy files from /ta...")
11:14, 25 March 2020 Brona talk contribs created page Lbioinf2 (Created page with " HWbioinf2  ==Eukaryotic gene structure== * Recall the Central dogma of molecular biology: the flow of genetic information from DNA to RNA to...")
11:07, 25 March 2020 Brona talk contribs created page HWflask (Created page with " See the lecture  '''General goal:''' Build a simple website, which lists all crawled users and for each users has a page with simple...")
11:06, 25 March 2020 Brona talk contribs created page Lflask (Created page with "=Lflask=  HWflask  In this lecture, we will use Python to process user comments obtained in the previous lecture. * We will display informat...")
13:24, 18 March 2020 Brona talk contribs created page HWbioinf1 (Created page with " See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf1</tt>  ===Task A: examine input files=== Cop...")
13:23, 18 March 2020 Brona talk contribs created page Lbioinf1 (Created page with " HWbioinf1  The next three lectures at targeted at the students in the Bioinformatics program and the goal is to get experience with several...")
18:20, 12 March 2020 Brona talk contribs created page HWweb (Created page with " See the lecture   Submit by copying requested files to <tt>/submit/web/username/</tt>  '''General goal:''...")
18:19, 12 March 2020 Brona talk contribs created page Lweb (Created page with "=Lweb=  HWweb  In this lecture, we will extract information from a website using Python and existing Python libraries. We will store the resu...")
13:22, 9 March 2020 Brona talk contribs created page HWpython (Created page with "==HWpython==  See also the lecture  ===Introduction=== Choose one of the options: * Tasks A, B1, B2, C (recommended for beginners)...")
13:21, 9 March 2020 Brona talk contribs created page Lpython (Created page with " HWpython  This lecture introduces the basics of the Python programming language. We will also cover basics of working with databases using t...")
07:31, 5 March 2020 Brona talk contribs created page HWmake (Created page with " See also the lecture  ===Motivation: Building Phylogenetic Trees=== The task for today will be to build a phylogenetic tree of 9 mamm...")
07:30, 5 March 2020 Brona talk contribs created page Lmake (Created page with "==Job Scheduling== * Some computing jobs take a lot of time: hours, days, weeks,... * We do not want to keep a command-line window open the whole time; therefore we run such...")
12:29, 26 February 2020 Brona talk contribs created page HWbash (Created page with " Lecture on Perl, Lecture on command-line tools  * In this set of tasks, use command-line tools or one-liners in Perl, awk or...")
12:27, 26 February 2020 Brona talk contribs created page Lbash (Created page with "=Lbash=  #HWbash  This lecture introduces command-line tools and Perl one-liners. * We will do simple transformations of text files using co...")
21:43, 19 February 2020 Brona talk contribs moved page Úvod to Introduction
20:39, 19 February 2020 Brona talk contribs created page HWperl (Created page with "==HWperl==  See the lecture  ===Files and setup=== We recommend creating a directory (folder) for this set of tasks: <syntaxhighlight l...")
20:34, 19 February 2020 Brona talk contribs created page Lperl (Created page with "=Lperl= This lecture is a brief introduction to the Perl scripting language. More information can be found below (section #Sources of Perl-related information). We recomme...")
21:04, 12 February 2020 Teacher talk contribs created page Projekt (Created page with "Cieľom projektu je vyskúšať si naučené zručnosti na konkrétnom projekte spracovania dát. Vašou úlohou je zohnať si dáta, tieto dáta analyzovať niektorými techn...")
20:36, 12 February 2020 Brona talk contribs deleted page L08
20:36, 12 February 2020 Brona talk contribs deleted page L09
20:36, 12 February 2020 Brona talk contribs deleted page L10
20:36, 12 February 2020 Brona talk contribs deleted page L10-2019
20:36, 12 February 2020 Brona talk contribs deleted page L11

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