1-DAV-202 Data Management 2023/24
Previously 2-INF-185 Data Source Integration

Materials · Introduction · Rules · Contact

· Grades from marked homeworks are on the server in file /grades/userid.txt

· Dates of project submission and oral exams: Early: submit project May 24 9:00am, oral exams May 27 1:00pm (limit 5 students). Otherwise submit project June 11, 9:00am, oral exams June 18 and 21 (estimated 9:00am-1:00pm, schedule will be published before exam). Sign up for one the exam days in AIS before June 11. Remedial exams will take place in the last week of the exam period. Beware, there will not be much time to prepare a better project. Projects should be submitted as homeworks to /submit/project.

· Cloud homework is due on May 20 9:00am.

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• 03:40, 21 July 2024 Brona talk contribs created page Data management 2023/24 (Created page with "Website for 2023/24 {| |- | 2024-02-22 || (BB) || ALL || Introduction to the course || Contact, Introduction, Rules, Connecting to server, Editors, Com...")
• 09:01, 11 April 2024 Brona talk contribs created page File:Lflask.png
• 09:01, 11 April 2024 Brona talk contribs uploaded File:Lflask.png
• 07:33, 14 March 2024 Brona talk contribs created page Python (Created page with "This page contains a brief Python tutorial for students who are not very familiar with the language. We will process files <tt>series.csv</tt> and <tt>episodes.csv</tt> introd...")
• 15:46, 7 March 2024 Brona talk contribs moved page HWpython to HWsql
• 15:44, 7 March 2024 Brona talk contribs moved page Lpython to Lsql
• 20:41, 25 January 2024 Brona talk contribs created page Screen (Created page with "Screen is a command that allows you to have a program running on the server even if you close the ssh connection (deliberately / by mistake / due to network problems). It is p...")
• 17:04, 15 May 2023 Brona talk contribs created page Data management 2022/23 (Created page with "Website for 2022/23 {| |- | 2023-02-13 || (BB/TV) || ALL || Introduction to the course || Contact, Introduction, Rules |- | || || || Introduction to Perl || Lpe...")
• 12:47, 19 February 2023 Brona talk contribs created page OPTbash (Created page with "===Task A (yeast genome)=== '''The input file:''' * <tt>/tasks/optional/bash/saccharomyces_cerevisiae.gff</tt> contains annotation of the yeast genome ** Downloaded from htt...")
• 16:50, 12 February 2023 Brona talk contribs deleted page Connecting from Windows (content was: "#REDIRECT Connecting to server", and the only contributor was "Brona" (talk))
• 16:48, 12 February 2023 Brona talk contribs moved page Connecting from Windows to Connecting to server
• 22:41, 11 February 2023 Brona talk contribs created page Command-line basics (Created page with "==Files and folders== * Images, texts, data, etc. are stored in files * Files are grouped in folders (directories) for better organization * A folder can also contain other fo...")
• 10:17, 11 February 2023 Brona talk contribs created page Editors (Created page with "* During the course, you will have to edit scripts, protocols and other files * Our server has several editors installed * If you can use graphical interface, we recommend <tt...")
• 21:11, 10 February 2023 Brona talk contribs moved page Projekt to Project
• 12:07, 10 February 2023 Brona talk contribs deleted page Manažment dát 2021/22 (content was: "#REDIRECT Data management 2021/22", and the only contributor was "Brona" (talk))
• 12:07, 10 February 2023 Brona talk contribs moved page Manažment dát 2021/22 to Data management 2021/22
• 11:34, 10 February 2023 Brona talk contribs deleted page Integrácia dátových zdrojov 2020/21 (content was: "#REDIRECT Data management 2020/21", and the only contributor was "Brona" (talk))
• 11:32, 10 February 2023 Brona talk contribs deleted page Integrácia dátových zdrojov 2021/22 (content was: "#REDIRECT Manažmen dát 2021/22", and the only contributor was "Brona" (talk))
• 11:31, 10 February 2023 Brona talk contribs deleted page Manažmen dát 2021/22 (content was: "#REDIRECT Manažment dát 2021/22", and the only contributor was "Brona" (talk))
• 11:31, 10 February 2023 Brona talk contribs moved page Manažmen dát 2021/22 to Manažment dát 2021/22
• 11:31, 10 February 2023 Brona talk contribs moved page Integrácia dátových zdrojov 2021/22 to Manažmen dát 2021/22
• 11:31, 10 February 2023 Brona talk contribs created page Integrácia dátových zdrojov 2021/22 (Created page with "{| |- | 2022-02-14 || (BB/TV) || ALL || Introduction to the course || [https://goo.gl/forms/aKdhAAUZIGD80PrQ2 Survey], Contact, Introduction, Rules, Connecting...")
• 11:15, 14 February 2022 Brona talk contribs restored page Materiály (1 revision)
• 17:21, 13 February 2022 Brona talk contribs deleted page Materiály (content was: "#REDIRECT Materials", and the only contributor was "Brona" (talk))
• 17:21, 13 February 2022 Brona talk contribs deleted page Pravidlá (content was: "#REDIRECT Rules", and the only contributor was "Brona" (talk))
• 17:20, 13 February 2022 Brona talk contribs restored page Rules (28 revisions)
• 17:20, 13 February 2022 Brona talk contribs deleted page Rules (content was: "==Grading== * Homeworks: 45% * Project proposal: 5% * Project and oral exam: 50% Grades: * A: 90 and more, B: 80...89, C: 70...79, D: 60...69, E: 50...59, FX: less than 50% You can get Fx if your oral exam is not satisfactory, even if you have sufficient points from other actitivities. ==Course format== * Every Monday two-hour class, we start with a short lecture. Then you start solving assigned tasks, which you complete as a homework assignment. * Online office hours on...")
• 17:20, 13 February 2022 Brona talk contribs deleted page Úvod (content was: "#REDIRECT Introduction", and the only contributor was "Brona" (talk))
• 17:19, 13 February 2022 Brona talk contribs deleted page Kontakt (content was: "#REDIRECT Contact", and the only contributor was "Brona" (talk))
• 17:19, 13 February 2022 Brona talk contribs deleted page Archív (content was: "#REDIRECT Archive", and the only contributor was "Brona" (talk))
• 17:19, 13 February 2022 Brona talk contribs moved page Archív to Archive
• 17:17, 13 February 2022 Brona talk contribs moved page Materiály to Materials
• 11:28, 13 February 2022 Brona talk contribs moved page Pravidlá to Rules
• 11:28, 13 February 2022 Brona talk contribs moved page Kontakt to Contact
• 10:26, 13 February 2022 Brona talk contribs moved page Integrácia dátových zdrojov 2020/21 to Data management 2020/21
• 10:15, 13 February 2022 Brona talk contribs created page Integrácia dátových zdrojov 2020/21 (Created page with "Here is a preliminary plan of lectures for this year (the topics and their order may change): {| |- | 2021-02-18 || (BB/TV) Introduction to Perl (basics, input processing) [...")
• 10:38, 23 March 2021 User account Balaz talk contribs was created by Brona talk contribs
• 20:32, 17 February 2021 Brona talk contribs restored page HWperl (1 revision)
• 20:31, 17 February 2021 Brona talk contribs deleted page HWperl
• 16:06, 25 May 2020 Brona talk contribs created page Integrácia dátových zdrojov 2019/20 (Created page with "Website for 2019/20 * Kontakt * Úvod * Pravidlá * Projekt {| |- | 2019-02-20 || (TV) Introduction to Perl (basics, input processing) Lecture, H...")
• 20:16, 29 April 2020 Brona talk contribs created page HWcloud (Created page with "<!-- NOTEX --> See also the lecture For both tasks, submit your source code and the result, when run on whole dataset (<tt>s3://idzbucket2</tt>). The code is expec...")
• 20:16, 29 April 2020 Brona talk contribs created page Lcloud (Created page with "Today we will work with [https://aws.amazon.com/ Amazon Web Services] (AWS), which is a cloud computing platform. It allows highly parallel computation on large datasets. We w...")
• 09:28, 23 April 2020 Brona talk contribs created page HWr2 (Created page with "==HWr2== <!-- NOTEX --> See also the current and the the previous lecture. * Do either tasks A,B,C (beginners) or B,C,D (more advanced). You can also do all f...")
• 09:27, 23 April 2020 Brona talk contribs created page Lr2 (Created page with "<!-- NOTEX --> HWr2 <!-- /NOTEX --> The topic of this lecture are statistical tests in R. * Beginners in statistics: listen to lecture, then do tasks A, B, C * If you kno...")
• 15:01, 15 April 2020 Brona talk contribs uploaded a new version of File:HW08-clusters.png
• 11:26, 15 April 2020 Brona talk contribs uploaded a new version of File:HW08-heatmap.png
• 20:52, 14 April 2020 Brona talk contribs created page Lr1 (Created page with "<!-- NOTEX --> HWr1 <!-- /NOTEX --> Program for this lecture: basics of R (applied to biology examples) * very short intro as a lecture * exercises have the form of a tut...")
• 20:33, 14 April 2020 Brona talk contribs created page HWr1 (Created page with "<!-- NOTEX --> See also the lecture <!-- /NOTEX --> In this homework, try to read the text, execute given commands, potentially trying some small modifications. Then...")
• 19:29, 31 March 2020 Brona talk contribs created page HWbioinf3 (Created page with "==HWbioinf3== <!-- NOTEX --> See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf3</tt> <!-- /NOTEX --> ===Input files=== Copy...")
• 19:29, 31 March 2020 Brona talk contribs created page Lbioinf3 (Created page with "<!-- NOTEX --> HWbioinf3 <!-- /NOTEX --> ==Polymorphisms== * Individuals within species differ slightly in their genomes * Polymorphisms are genome variants which are rel...")

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