1-DAV-202 Data Management 2023/24
Previously 2-INF-185 Data Source Integration
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- 09:51, 12 April 2024 Teacher talk contribs created page HWcpp (Created page with "<!-- NOTEX --> See the lecture <!-- /NOTEX -->")
- 09:50, 12 April 2024 Teacher talk contribs created page Lcpp (Created page with "<!-- NOTEX --> HWweb <!-- /NOTEX -->")
- 10:01, 11 April 2024 Brona talk contribs uploaded File:Lflask.png
- 10:01, 11 April 2024 Brona talk contribs created page File:Lflask.png
- 08:33, 14 March 2024 Brona talk contribs created page Python (Created page with "This page contains a brief Python tutorial for students who are not very familiar with the language. We will process files <tt>series.csv</tt> and <tt>episodes.csv</tt> introd...")
- 16:46, 7 March 2024 Brona talk contribs moved page HWpython to HWsql
- 16:44, 7 March 2024 Brona talk contribs moved page Lpython to Lsql
- 21:41, 25 January 2024 Brona talk contribs created page Screen (Created page with "Screen is a command that allows you to have a program running on the server even if you close the ssh connection (deliberately / by mistake / due to network problems). It is p...")
- 18:04, 15 May 2023 Brona talk contribs created page Data management 2022/23 (Created page with "Website for 2022/23 {| |- | 2023-02-13 || (BB/TV) || ALL || Introduction to the course || Contact, Introduction, Rules |- | || || || Introduction to Perl || Lpe...")
- 17:19, 17 April 2023 Usama talk contribs uploaded File:Billing.png.png
- 17:19, 17 April 2023 Usama talk contribs created page File:Billing.png.png
- 13:47, 19 February 2023 Brona talk contribs created page OPTbash (Created page with "===Task A (yeast genome)=== '''The input file:''' * <tt>/tasks/optional/bash/saccharomyces_cerevisiae.gff</tt> contains annotation of the yeast genome ** Downloaded from htt...")
- 17:50, 12 February 2023 Brona talk contribs deleted page Connecting from Windows (content was: "#REDIRECT Connecting to server", and the only contributor was "Brona" (talk))
- 17:48, 12 February 2023 Brona talk contribs moved page Connecting from Windows to Connecting to server
- 23:41, 11 February 2023 Brona talk contribs created page Command-line basics (Created page with "==Files and folders== * Images, texts, data, etc. are stored in files * Files are grouped in folders (directories) for better organization * A folder can also contain other fo...")
- 11:17, 11 February 2023 Brona talk contribs created page Editors (Created page with "* During the course, you will have to edit scripts, protocols and other files * Our server has several editors installed * If you can use graphical interface, we recommend <tt...")
- 22:11, 10 February 2023 Brona talk contribs moved page Projekt to Project
- 13:07, 10 February 2023 Brona talk contribs deleted page Manažment dát 2021/22 (content was: "#REDIRECT Data management 2021/22", and the only contributor was "Brona" (talk))
- 13:07, 10 February 2023 Brona talk contribs moved page Manažment dát 2021/22 to Data management 2021/22
- 12:34, 10 February 2023 Brona talk contribs deleted page Integrácia dátových zdrojov 2020/21 (content was: "#REDIRECT Data management 2020/21", and the only contributor was "Brona" (talk))
- 12:32, 10 February 2023 Brona talk contribs deleted page Integrácia dátových zdrojov 2021/22 (content was: "#REDIRECT Manažmen dát 2021/22", and the only contributor was "Brona" (talk))
- 12:31, 10 February 2023 Brona talk contribs deleted page Manažmen dát 2021/22 (content was: "#REDIRECT Manažment dát 2021/22", and the only contributor was "Brona" (talk))
- 12:31, 10 February 2023 Brona talk contribs moved page Manažmen dát 2021/22 to Manažment dát 2021/22
- 12:31, 10 February 2023 Brona talk contribs moved page Integrácia dátových zdrojov 2021/22 to Manažmen dát 2021/22
- 12:31, 10 February 2023 Brona talk contribs created page Integrácia dátových zdrojov 2021/22 (Created page with "{| |- | 2022-02-14 || (BB/TV) || ALL || Introduction to the course || [https://goo.gl/forms/aKdhAAUZIGD80PrQ2 Survey], Contact, Introduction, Rules, Connecting...")
- 10:46, 21 March 2022 Usama talk contribs created page File:Web-screenshot2.png
- 10:46, 21 March 2022 Usama talk contribs uploaded File:Web-screenshot2.png
- 10:46, 21 March 2022 Usama talk contribs created page File:Web-screenshot1.png
- 10:46, 21 March 2022 Usama talk contribs uploaded File:Web-screenshot1.png
- 12:15, 14 February 2022 Brona talk contribs restored page Materiály (1 revision)
- 18:21, 13 February 2022 Brona talk contribs deleted page Materiály (content was: "#REDIRECT Materials", and the only contributor was "Brona" (talk))
- 18:21, 13 February 2022 Brona talk contribs deleted page Pravidlá (content was: "#REDIRECT Rules", and the only contributor was "Brona" (talk))
- 18:20, 13 February 2022 Brona talk contribs restored page Rules (28 revisions)
- 18:20, 13 February 2022 Brona talk contribs deleted page Rules (content was: "==Grading== * Homeworks: 45% * Project proposal: 5% * Project and oral exam: 50% Grades: * A: 90 and more, B: 80...89, C: 70...79, D: 60...69, E: 50...59, FX: less than 50% You can get Fx if your oral exam is not satisfactory, even if you have sufficient points from other actitivities. ==Course format== * Every Monday two-hour class, we start with a short lecture. Then you start solving assigned tasks, which you complete as a homework assignment. * Online office hours on...")
- 18:20, 13 February 2022 Brona talk contribs deleted page Úvod (content was: "#REDIRECT Introduction", and the only contributor was "Brona" (talk))
- 18:19, 13 February 2022 Brona talk contribs deleted page Kontakt (content was: "#REDIRECT Contact", and the only contributor was "Brona" (talk))
- 18:19, 13 February 2022 Brona talk contribs deleted page Archív (content was: "#REDIRECT Archive", and the only contributor was "Brona" (talk))
- 18:19, 13 February 2022 Brona talk contribs moved page Archív to Archive
- 18:17, 13 February 2022 Brona talk contribs moved page Materiály to Materials
- 12:28, 13 February 2022 Brona talk contribs moved page Pravidlá to Rules
- 12:28, 13 February 2022 Brona talk contribs moved page Kontakt to Contact
- 11:26, 13 February 2022 Brona talk contribs moved page Integrácia dátových zdrojov 2020/21 to Data management 2020/21
- 11:15, 13 February 2022 Brona talk contribs created page Integrácia dátových zdrojov 2020/21 (Created page with "Here is a preliminary plan of lectures for this year (the topics and their order may change): {| |- | 2021-02-18 || (BB/TV) Introduction to Perl (basics, input processing) [...")
- 11:38, 23 March 2021 User account Balaz talk contribs was created by Brona talk contribs
- 17:31, 18 February 2021 Tvinar talk contribs created page Connecting from Windows (Created page with "== Connection through ssh == You can use ssh client available in Windows 10. On command line use: ssh <username>@vyuka.compbio.fmph.uniba.sk However, if you want more conf...")
- 21:32, 17 February 2021 Brona talk contribs restored page HWperl (1 revision)
- 21:31, 17 February 2021 Brona talk contribs deleted page HWperl
- 17:06, 25 May 2020 Brona talk contribs created page Integrácia dátových zdrojov 2019/20 (Created page with "Website for 2019/20 * Kontakt * Úvod * Pravidlá * Projekt {| |- | 2019-02-20 || (TV) Introduction to Perl (basics, input processing) Lecture, H...")
- 21:16, 29 April 2020 Brona talk contribs created page HWcloud (Created page with "<!-- NOTEX --> See also the lecture For both tasks, submit your source code and the result, when run on whole dataset (<tt>s3://idzbucket2</tt>). The code is expec...")
- 21:16, 29 April 2020 Brona talk contribs created page Lcloud (Created page with "Today we will work with [https://aws.amazon.com/ Amazon Web Services] (AWS), which is a cloud computing platform. It allows highly parallel computation on large datasets. We w...")
- 10:28, 23 April 2020 Brona talk contribs created page HWr2 (Created page with "==HWr2== <!-- NOTEX --> See also the current and the the previous lecture. * Do either tasks A,B,C (beginners) or B,C,D (more advanced). You can also do all f...")
- 10:27, 23 April 2020 Brona talk contribs created page Lr2 (Created page with "<!-- NOTEX --> HWr2 <!-- /NOTEX --> The topic of this lecture are statistical tests in R. * Beginners in statistics: listen to lecture, then do tasks A, B, C * If you kno...")
- 16:01, 15 April 2020 Brona talk contribs uploaded a new version of File:HW08-clusters.png
- 12:26, 15 April 2020 Brona talk contribs uploaded a new version of File:HW08-heatmap.png
- 21:52, 14 April 2020 Brona talk contribs created page Lr1 (Created page with "<!-- NOTEX --> HWr1 <!-- /NOTEX --> Program for this lecture: basics of R (applied to biology examples) * very short intro as a lecture * exercises have the form of a tut...")
- 21:33, 14 April 2020 Brona talk contribs created page HWr1 (Created page with "<!-- NOTEX --> See also the lecture <!-- /NOTEX --> In this homework, try to read the text, execute given commands, potentially trying some small modifications. Then...")
- 20:29, 31 March 2020 Brona talk contribs created page HWbioinf3 (Created page with "==HWbioinf3== <!-- NOTEX --> See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf3</tt> <!-- /NOTEX --> ===Input files=== Copy...")
- 20:29, 31 March 2020 Brona talk contribs created page Lbioinf3 (Created page with "<!-- NOTEX --> HWbioinf3 <!-- /NOTEX --> ==Polymorphisms== * Individuals within species differ slightly in their genomes * Polymorphisms are genome variants which are rel...")
- 20:24, 31 March 2020 Brona talk contribs created page HWjavascript (Created page with "<!-- NOTEX --> See the lecture <!-- /NOTEX --> '''General goal:''' Extend the user pages from the previous lecture with simple visualizations. <!-- NOTEX -->...")
- 20:24, 31 March 2020 Brona talk contribs created page Ljavascript (Created page with "=Ljavascript= <!-- NOTEX --> HWjavascript <!-- /NOTEX --> In this lecture we will extend the website from the previous lecture with interactive visualizations written in...")
- 12:14, 25 March 2020 Brona talk contribs created page HWbioinf2 (Created page with "<!-- NOTEX --> See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf2</tt> <!-- /NOTEX --> ===Input files=== Copy files from /ta...")
- 12:14, 25 March 2020 Brona talk contribs created page Lbioinf2 (Created page with "<!-- NOTEX --> HWbioinf2 <!-- /NOTEX --> ==Eukaryotic gene structure== * Recall the Central dogma of molecular biology: the flow of genetic information from DNA to RNA to...")
- 12:07, 25 March 2020 Brona talk contribs created page HWflask (Created page with "<!-- NOTEX --> See the lecture <!-- /NOTEX --> '''General goal:''' Build a simple website, which lists all crawled users and for each users has a page with simple...")
- 12:06, 25 March 2020 Brona talk contribs created page Lflask (Created page with "=Lflask= <!-- NOTEX --> HWflask <!-- /NOTEX --> In this lecture, we will use Python to process user comments obtained in the previous lecture. * We will display informat...")
- 14:24, 18 March 2020 Brona talk contribs created page HWbioinf1 (Created page with "<!-- NOTEX --> See also the lecture Submit the protocol and the required files to <tt>/submit/bioinf1</tt> <!-- /NOTEX --> ===Task A: examine input files=== Cop...")
- 14:23, 18 March 2020 Brona talk contribs created page Lbioinf1 (Created page with "<!-- NOTEX --> HWbioinf1 <!-- /NOTEX --> The next three lectures at targeted at the students in the Bioinformatics program and the goal is to get experience with several...")
- 19:20, 12 March 2020 Brona talk contribs created page HWweb (Created page with "<!-- NOTEX --> See the lecture <!-- /NOTEX --> <!-- NOTEX --> Submit by copying requested files to <tt>/submit/web/username/</tt> <!-- /NOTEX --> '''General goal:''...")
- 19:19, 12 March 2020 Brona talk contribs created page Lweb (Created page with "=Lweb= <!-- NOTEX --> HWweb <!-- /NOTEX --> In this lecture, we will extract information from a website using Python and existing Python libraries. We will store the resu...")
- 14:22, 9 March 2020 Brona talk contribs created page HWpython (Created page with "==HWpython== <!-- NOTEX --> See also the lecture <!-- /NOTEX --> ===Introduction=== Choose one of the options: * Tasks A, B1, B2, C (recommended for beginners)...")
- 14:21, 9 March 2020 Brona talk contribs created page Lpython (Created page with "<!-- NOTEX --> HWpython <!-- /NOTEX --> This lecture introduces the basics of the Python programming language. We will also cover basics of working with databases using t...")
- 08:31, 5 March 2020 Brona talk contribs created page HWmake (Created page with "<!-- NOTEX --> See also the lecture <!-- /NOTEX --> ===Motivation: Building Phylogenetic Trees=== The task for today will be to build a phylogenetic tree of 9 mamm...")
- 08:30, 5 March 2020 Brona talk contribs created page Lmake (Created page with "==Job Scheduling== * Some computing jobs take a lot of time: hours, days, weeks,... * We do not want to keep a command-line window open the whole time; therefore we run such...")
- 13:29, 26 February 2020 Brona talk contribs created page HWbash (Created page with "<!-- NOTEX --> Lecture on Perl, Lecture on command-line tools <!-- /NOTEX --> * In this set of tasks, use command-line tools or one-liners in Perl, awk or...")
- 13:27, 26 February 2020 Brona talk contribs created page Lbash (Created page with "=Lbash= <!-- NOTEX --> #HWbash <!-- /NOTEX --> This lecture introduces command-line tools and Perl one-liners. * We will do simple transformations of text files using co...")
- 22:43, 19 February 2020 Brona talk contribs moved page Úvod to Introduction
- 21:39, 19 February 2020 Brona talk contribs created page HWperl (Created page with "==HWperl== <!-- NOTEX --> See the lecture <!-- /NOTEX --> ===Files and setup=== We recommend creating a directory (folder) for this set of tasks: <syntaxhighlight l...")
- 21:34, 19 February 2020 Brona talk contribs created page Lperl (Created page with "=Lperl= This lecture is a brief introduction to the Perl scripting language. More information can be found below (section #Sources of Perl-related information). We recomme...")
- 22:04, 12 February 2020 Teacher talk contribs created page Projekt (Created page with "Cieľom projektu je vyskúšať si naučené zručnosti na konkrétnom projekte spracovania dát. Vašou úlohou je zohnať si dáta, tieto dáta analyzovať niektorými techn...")
- 21:36, 12 February 2020 Brona talk contribs deleted page L08
- 21:36, 12 February 2020 Brona talk contribs deleted page L09
- 21:36, 12 February 2020 Brona talk contribs deleted page L10
- 21:36, 12 February 2020 Brona talk contribs deleted page L10-2019
- 21:36, 12 February 2020 Brona talk contribs deleted page L11
- 21:36, 12 February 2020 Brona talk contribs deleted page L01
- 21:36, 12 February 2020 Brona talk contribs deleted page L02
- 21:36, 12 February 2020 Brona talk contribs deleted page L03
- 21:36, 12 February 2020 Brona talk contribs deleted page L04
- 21:36, 12 February 2020 Brona talk contribs deleted page L05bin
- 21:36, 12 February 2020 Brona talk contribs deleted page L05inf
- 21:36, 12 February 2020 Brona talk contribs deleted page L06
- 21:36, 12 February 2020 Brona talk contribs deleted page L06bin
- 21:36, 12 February 2020 Brona talk contribs deleted page L06inf
- 21:36, 12 February 2020 Brona talk contribs deleted page L07bin
- 21:36, 12 February 2020 Brona talk contribs deleted page L07inf
- 21:36, 12 February 2020 Brona talk contribs deleted page HW05inf
- 21:36, 12 February 2020 Brona talk contribs deleted page HW06
- 21:36, 12 February 2020 Brona talk contribs deleted page HW06bin
- 21:36, 12 February 2020 Brona talk contribs deleted page HW06inf
- 21:36, 12 February 2020 Brona talk contribs deleted page HW07bin
- 21:36, 12 February 2020 Brona talk contribs deleted page HW07inf
- 21:36, 12 February 2020 Brona talk contribs deleted page HW08
- 21:36, 12 February 2020 Brona talk contribs deleted page HW09
- 21:36, 12 February 2020 Brona talk contribs deleted page HW10
- 21:36, 12 February 2020 Brona talk contribs deleted page HW10-2019
- 21:36, 12 February 2020 Brona talk contribs deleted page HW11
- 21:36, 12 February 2020 Brona talk contribs deleted page HW01
- 21:36, 12 February 2020 Brona talk contribs deleted page HW02
- 21:36, 12 February 2020 Brona talk contribs deleted page HW03
- 21:36, 12 February 2020 Brona talk contribs deleted page HW04
- 21:36, 12 February 2020 Brona talk contribs deleted page HW05bin
- 11:01, 2 August 2019 Brona talk contribs uploaded File:Tree.png
- 14:12, 29 June 2019 Brona talk contribs moved page HW10-2019 to HW10
- 14:12, 29 June 2019 Brona talk contribs moved page L10-2019 to L10
- 14:11, 29 June 2019 Brona talk contribs deleted page HW10 (content was: "L10 * Do either tasks A,B,C (beginners) or B,C,D (more advanced). If you really want, you can do all four for bonus credit. * In your protocol write used R comman..." (and the only contributor was "Brona"))
- 14:11, 29 June 2019 Brona talk contribs deleted page L10 (content was: "HW10 Topic of this lecture are statistical tests in R. * Beginners in statistics: listen to lecture, then do tasks A, B, C * If you know basics of statistical te..." (and the only contributor was "Brona"))
- 12:52, 11 April 2019 Brona talk contribs moved page L09 to L08 without leaving a redirect
- 12:51, 11 April 2019 Brona talk contribs moved page HW09 to HW08 without leaving a redirect
- 12:51, 11 April 2019 Brona talk contribs deleted page HW08
- 12:51, 11 April 2019 Brona talk contribs deleted page L08
- 17:17, 27 March 2019 Brona talk contribs uploaded File:Dogma.png
- 18:43, 21 March 2019 Brona talk contribs moved page HW07 to HW06inf without leaving a redirect
- 18:42, 21 March 2019 Brona talk contribs moved page L07 to L06inf without leaving a redirect
- 09:47, 21 March 2019 Brona talk contribs uploaded File:Dotplot-mt-human-dros.png
- 21:47, 19 March 2019 Brona talk contribs moved page L05i to L05inf without leaving a redirect
- 21:46, 19 March 2019 Brona talk contribs moved page HW05i to HW05inf without leaving a redirect
- 13:50, 14 March 2019 Brona talk contribs moved page HW05 to HW04 without leaving a redirect
- 13:44, 14 March 2019 Brona talk contribs moved page L05 to L04 without leaving a redirect
- 21:15, 6 March 2019 Brona talk contribs moved page HW04 to HW03 without leaving a redirect
- 21:14, 6 March 2019 Brona talk contribs moved page L04 to L03 without leaving a redirect
- 21:00, 27 February 2019 Brona talk contribs moved page HW03 to HW02 without leaving a redirect
- 20:59, 27 February 2019 Brona talk contribs deleted page HW02
- 20:56, 27 February 2019 Brona talk contribs moved page L03 to L02 without leaving a redirect
- 20:55, 27 February 2019 Brona talk contribs deleted page L02
- 13:17, 21 March 2017 Brona talk contribs deleted page HW08
- 13:17, 21 March 2017 Brona talk contribs moved page HW08 to HW05
- 14:22, 28 February 2017 Brona talk contribs uploaded a new version of File:L02 human 31770.png
- 14:22, 28 February 2017 Brona talk contribs uploaded a new version of File:L02 human 15749.png
- 14:21, 28 February 2017 Brona talk contribs uploaded a new version of File:L02 human 13531.png
- 14:21, 28 February 2017 Brona talk contribs uploaded a new version of File:L02 consensus.png
- 14:07, 28 February 2017 Brona talk contribs uploaded File:L02 human 15749.png
- 14:07, 28 February 2017 Brona talk contribs uploaded File:L02 human 13531.png
- 14:07, 28 February 2017 Brona talk contribs uploaded File:L02 human 31770.png
- 14:06, 28 February 2017 Brona talk contribs uploaded File:L02 consensus.png
- 22:07, 20 February 2017 Brona talk contribs moved page L1 to L01 without leaving a redirect
- 22:07, 20 February 2017 Brona talk contribs deleted page HW3 (content was: "#REDIRECT HW03" (and the only contributor was "Brona"))
- 22:06, 20 February 2017 Brona talk contribs deleted page HW2
- 22:06, 20 February 2017 Brona talk contribs deleted page HW1
- 21:56, 20 February 2017 Brona talk contribs deleted page HW07
- 21:56, 20 February 2017 Brona talk contribs deleted page HW08
- 21:56, 20 February 2017 Brona talk contribs deleted page HW09
- 21:56, 20 February 2017 Brona talk contribs deleted page HW10
- 21:56, 20 February 2017 Brona talk contribs deleted page HW11
- 21:56, 20 February 2017 Brona talk contribs deleted page L10
- 21:56, 20 February 2017 Brona talk contribs deleted page L11
- 21:56, 20 February 2017 Brona talk contribs deleted page L2
- 21:56, 20 February 2017 Brona talk contribs deleted page L3
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- 21:56, 20 February 2017 Brona talk contribs deleted page L8
- 21:56, 20 February 2017 Brona talk contribs deleted page L9
- 21:56, 20 February 2017 Brona talk contribs deleted page HW02
- 21:56, 20 February 2017 Brona talk contribs deleted page HW03
- 21:56, 20 February 2017 Brona talk contribs deleted page HW04
- 21:56, 20 February 2017 Brona talk contribs deleted page HW05
- 21:56, 20 February 2017 Brona talk contribs deleted page HW06
- 21:43, 1 May 2016 User account Lpryszcz talk contribs was created by Brona talk contribs and password was sent by email
- 14:09, 13 April 2016 Brona talk contribs uploaded File:HW08-clusters.png
- 14:05, 13 April 2016 Brona talk contribs deleted page File:HW08-clusters.png
- 14:01, 13 April 2016 Brona talk contribs uploaded File:HW08-clusters.png
- 14:01, 13 April 2016 Brona talk contribs uploaded File:HW08-heatmap.png
- 15:10, 16 March 2016 Brona talk contribs moved page HW3 to HW03
- 15:10, 16 March 2016 Brona talk contribs moved page HW1 to HW01
- 15:10, 16 March 2016 Brona talk contribs moved page HW2 to HW02
- 16:07, 2 March 2016 User account Usama talk contribs was created by Brona talk contribs and password was sent by email
- 15:21, 2 March 2016 Brona talk contribs deleted page Editor:Teacher/common.css
- 15:09, 2 March 2016 Teacher talk contribs moved page Editor:Teacher/common.css to User:Teacher/common.css
- 15:07, 2 March 2016 User account Teacher talk contribs was created by Brona talk contribs
- 10:16, 1 March 2016 User account Tvinar talk contribs was created by Brona talk contribs
- 14:16, 12 February 2016 Brona talk contribs deleted page File:Logo.png (Deleted old revision 20160212121609!Logo.png)
- 14:16, 12 February 2016 Brona talk contribs uploaded a new version of File:Logo.png
- 13:44, 12 February 2016 Brona talk contribs uploaded File:E-bb.png
- 13:37, 12 February 2016 Brona talk contribs uploaded File:Logo.png
- 13:37, 12 February 2016 Brona talk contribs deleted page File:Logo.png
- 13:31, 12 February 2016 Brona talk contribs deleted page File:Logo.png (Deleted old revision 20160212113029!Logo.png)
- 13:30, 12 February 2016 Brona talk contribs uploaded a new version of File:Logo.png
- 13:28, 12 February 2016 Brona talk contribs uploaded File:Logo.png