2-AIN-506 a 2-AIN-252: Seminár z bioinformatiky (2) a (4)
Leto 2020
Rozvrh

Seminár:
Utorok 17:20, M-X
Vyučujúci:
doc. Mgr. Tomáš Vinař, PhD	M-163,

doc. Mgr. Broňa Brejová, PhD	M-163,

Oznamy:
Od 31.3. semináre pokračujú prostredníctvom telekonferenčných hovorov, vždy v obvyklom čase o 17:20. Pripojíte sa na linke https://meet.google.com/czn-mpfg-ipx Súbory k prezentácii zdieľame cez Google classroom.
Zoznam prezentácií:

18.2.2020	Seminár nebude
25.2.2020 Broňa Brejová	Bioinformatika koronavírusu
3.3.2020	Seminár zrušený
10.3.2020	Niekoľko seminárov sa nekonalo kvôli prerušeniu prezenčnej výučby
17.3.2020
24.3.2020
31.3.2020 Domonika Szabová	Zhenchang Liang, Shengchang Duan, Jun Sheng, Shusheng Zhu, Xuemei Ni, Jianhui Shao, Chonghuai Liu, Peter Nick, Fei Du, Peige Fan, Ruzhi Mao, Yifan Zhu, Weiping Deng, Min Yang, Huichuan Huang, Yixiang Liu, Yiqing Ding, Xianju Liu, Jianfu Jiang, Youyong Zhu, Shaohua Li, Xiahong He, Wei Chen, Yang Dong. Whole-genome resequencing of 472 Vitis accessions for grapevine diversity and demographic history analyses. Nat Commun, 2019. link
7.4.2020 Adrián Goga	David C. Danko, Dmitry Meleshko, Daniela Bezdan, Christopher Mason, Iman Hajirasouliha. Minerva: an alignment- and reference-free approach to deconvolve Linked-Reads formetagenomics. Genome research, 2019. link
14.4.2020	Seminár nebude, Veľká noc
21.4.2020 Askar Gafurov	Sophie Rohling, Alexander Linne, Jendrik Schellhorn, Morteza Hosseini, Thomas Dencker, Burkhard Morgenstern. The number of k-mer matches between two DNA sequences as a function of k and applications to estimate phylogenetic distances. PLoS One, 2020. link
28.4.2020 Dominika Mihálová	Tanja Stadler, Denise Kuhnert, Sebastian Bonhoeffer, Alexei J. Drummond. Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV). Proceedings of the National Academy of Sciences of the United States of America, 2013. The website links to a blog post applying this method to SARS-CoV-2. link
5.5.2020	Seminár z technických príčin presunutý
12.5.2020 Broňa Brejová	James Hadfield, Colin Megill, Sidney M. Bell, John Huddleston, Barney Potter, Charlton Callender, Pavel Sagulenko, Trevor Bedford, Richard A. Neher. Nextstrain: real-time tracking of pathogen evolution. Bioinformatics, 2018. link Pavel Sagulenko, Vadim Puller, Richard A. Neher. TreeTime: Maximum-likelihood phylodynamic analysis. Virus Evol, 2018. link