Peng, J.,  Schwartz, D.,  Elias, J.E.,  Thoreen, C.C.,  Cheng, D.,  Marsischky, G.,  Roelofs, J.,  Finley, D.,  Gygi, S.P. (2003). A proteomics approach to understanding protein ubiquitination. Nat Biotechnol 21: 921-926.
https://doi.org/10.1038/nbt849

Whole proteome ubiquitylation analysis

Uniprot ID	Systematic gene name	Standard gene name	Position	Modification type
P05750	YNL178W	RPS3	212	Ubiquitination
P08679	YCR005C	CIT2	354	Ubiquitination
P08679	YCR005C	CIT2	385	Ubiquitination
P10592	YLL024C	SSA2	521	Ubiquitination
P10592	YLL024C	SSA2	556	Ubiquitination
P25694	YDL126C	CDC48	594	Ubiquitination
P32657	YER164W	CHD1	1144	Ubiquitination
P33302	YOR153W	PDR5	825	Ubiquitination
P34231	YKL187C	FAT3	697	Ubiquitination
P36035	YKL217W	JEN1	2	N-acetylation
P36035	YKL217W	JEN1	9	Ubiquitination
P36035	YKL217W	JEN1	338	Ubiquitination
P38075	YBR035C	PDX3	29	Ubiquitination
P38079	YBR054W	YRO2	286	Ubiquitination
P38695	YHR096C	HXT5	61	Ubiquitination
P38701	YHL015W	RPS20	8	Ubiquitination
P38809	YHR097C	PAL2	78	Ubiquitination
P38809	YHR097C	PAL2	187	Ubiquitination
P38809	YHR097C	PAL2	242	Ubiquitination
P39003	YDR343C	HXT6	560	Ubiquitination
P39004	YDR342C	HXT7	40	Ubiquitination
P39004	YDR342C	HXT7	318	Ubiquitination
P39004	YDR342C	HXT7	560	Ubiquitination
P39976	YEL071W	DLD3	17	Ubiquitination
P40531	YIL041W	GVP36	305	Ubiquitination
P40531	YIL041W	GVP36	313	Ubiquitination
P48813	YDR508C	GNP1	34	Ubiquitination
P48813	YDR508C	GNP1	41	Ubiquitination
P48813	YDR508C	GNP1	132	Ubiquitination
P53322	YGR260W	TNA1	283	Ubiquitination
P54115	YPL061W	ALD6	3	Ubiquitination
Q03559	YMR295C	YMR295C	26	Ubiquitination
Q03559	YMR295C	YMR295C	32	Ubiquitination
Q07622	YDL203C	ACK1	184	Ubiquitination
Q08245	YOL109W	ZEO1	45	Ubiquitination
Q08245	YOL109W	ZEO1	57	Ubiquitination