We have implemented our algorithm in C++. Currently it is using own input and output formats. You can download source code of our implementation (the license is GPLv3). We have implemented HERD in C++ and it heavily use templates so if you have less than 350MB of free memory, you may have problems to compile it (at least with gcc).
Note: There will be an new version of HERD soon (cleanup of code, new features and ability to read FASTA input files).
This page was created by Michal Nánási
