People


Broňa Brejová
associate professor
(computer science)
sequence analysis, gene finding, evolution

Tomáš Vinař
associate professor
(applied informatics)
bioinformatics, algorithms, evolution

Vladimír Boža
doctoral studentsequence assembly, sequencing technologies

Jaroslav Budiš
doctoral studentapplications of NGS

Albert Herencsár
 
doctoral studentgenome rearrangements

Michal Hozza
doctoral studentestimating genome size

Askar Gafurov
 
master studentgenome assembly

Matej Krajčovič
 
master studentduplication histories

Peter Koza
 
master studentinfrastructure for web services

Werner Krampl
 
master studentgenome size estimation

Vladimír Macko
 
master studentdifferences between genomes

Rastislav Rabatin
 
master studentnanopore data processing

Marcel Schichman
 
master studentread correction

Dávid Simeunovič
 
master studentsequence segmentation

Daniel Dervjanik
 
bachelor studentgenome assembly evaluation

Jakub Havelka
 
bachelor studentnanopore data alignment

Radoslav Chládek
 
bachelor studentvisualization of evolutionary histories

Mário Lipovský
 
bachelor studentgenome size estimation

Matúš Zeleňák
 
bachelor studentnanopore data alignment

[2009] [2012]

Alumni


Rastislav Šrámek
 
master student 2007
Continued as doctoral student ETH Zürich
The On-line Viterbi Algorithm

Jakub Kováč
 
master student 2009
Continued as a doctoral student in our group
Gene Finding Using RT-PCR Tests

Michal Burger
 
master student 2010
Continued at Facebook
Atomization of DNA Sequences with Complex Evolutionary History

Peter Herman
 
bachelor student 2010
Continued as master student at Comenius University
Grafické prostredie na editovanie RNA motívov

Peter Kováč
 
bachelor student 2010
Continued as master student in the group
Implementácia externých zdrojov dát v hľadaní génov

Juraj Mešťánek
 
master student 2010
Continued in Adinis.sk
Software for Annotation of Protein Coding Genes in Yeast Mitochondrial Genomes

Michal Nánási
 
master student 2010
Continued as doctoral student in our group
Biological sequence annotation with hidden Markov models

Ladislav Rampášek
 
bachelor student 2010
Continued as master student in the group
RNA motif search in genomic sequences

Martin Králik
 
master student 2011
Continued at Facebook
Pravdepodobnostné modely pre alternatívny zostrih génov

Martin Kravec
 
master student 2011
Continued as doctoral student in our group
MCMC algoritmus na rekonštrukciu duplikačných histórií

Marcel Kucharík
 
master student 2011
Continued as doctoral student Universität Wien
A New Algorithm for Using External Information in Gene Finding

Jaroslav Budiš
 
master student 2011
Continued as doctoral student in our group
Discovering motifs in mitochondrial DNA

Milan Mikula
 
bachelor student 2011
Continued as master student at Comenius University
Anotácia zhlukov génov

Andrej Ridzik
 
bachelor student 2011
Continued as master student in our group
Použitie komparatívnej informácie pri hľadaní génov

Peter Kováč
 
master student 2012
Continued at MicroStep-MIS
Bioinformatics of Sequences with Repetitive Motifs

Ladislav Rampášek
 
master student 2012
Continued as doctoral student University of Toronto
Computational Complexity and Practical Implementation of RNA Motif Search

Jakub Kováč
 
bachelor student 2012
Continued as master student at Comenius University
Kompresia genómu za pomoci skrytých Markovovských modelov

Michal Petrucha
 
bachelor student 2012
Continued as master student at Comenius University
Data Structures for Whole-Genome Alignments

Martin Macko
 
doctoral student 2012Algoritmus pre hľadanie vzdialených funkčných ortológov a jeho aplikácia na OB-fold doménu

Pavol Kmeč
 
master student 2013Vykresľovanie RNA motívov

Martin Višňovec
 
master student 2013Systém na hľadanie ortológov v príbuzných genómoch

Martin Bobák
 
master student 2013Identifikácia variantov génov z dát sekvenovania novej generácie

Kubo Kováč
 
doctoral student 2013Algorithms for Genome Rearrangements

Martina Višňovská
 
doctoral student 2014Alignments on Sequences with Internal Structure

Lukáš Bača
 
master student 2014Trénovanie parametrov pre hľadanie génov s využitím externej informácie

Soňa Gibaštíková
 
master student 2014Finding Conserved Gene Clusters in Duplicated Genomes

Albert Herencsár
 
master student 2014An improved algorithm for ancestral gene order reconstruction

Michal Hozza
 
master student 2014Zarovnávanie sekvencií s použitím metód klasifikácie

Andrej Ridzik
 
master student 2014Algoritmy na rozpoznávanie neuropeptidov

Veronika Ženišová
 
master student 2014Algoritmy na rekonštrukciu genómov pomocou preusporiadania

Michal Anderle
 
bachelor student 2014Časovanie udalostí pri inferencii duplikačných histórií

Ján Hozza
 
bachelor student 2014Rekonštrukcia duplikačných histórií pomocou pravdepodobnostného modelu

Petra Kubincová
 
bachelor student 2014Mapping between Genomes

Michal Nánási
 
doctoral student 2015hidden Markov models, alignment

Marcel Schichman
 
bachelor student 2015sequence alignment of long reads

Michal Sabo
 
master student 2015rearrangement history reconstruction

Jakub Jursa
 
master student 2015Dátové štruktúry pre uchovávanie sekvenovacích dát

Ján Hozza
 
master student 2016duplication history reconstruction

Jaroslav Petrucha
 
bachelor student 2016efficient representation of NGS data sets

Dávid Simeunovič
 
bachelor student 2016visualization of gene duplication

Rastislav Rabatin
 
bachelor student 2016nanopore read alignment

Peter Koza
 
bachelor student 2016visualization of RNA motifs

Peter Kuljovský
 
bachelor student 2016genome indexing