People


Broňa Brejová	associate professor (computer science)	sequence analysis, gene finding, evolution

Tomáš Vinař	associate professor (applied informatics)	bioinformatics, algorithms, evolution

Mária Lucká	full professor (applied informatics)	parallel computing, optimization, bioinformatics

Vlado Boža	assistant professor (applied informatics)	machine learning, bioinformatics

Peter Perešíni	independent researcher (applied informatics)	machine learning, bioinformatics

Andrej Baláž	PhD student	analysis of phage genomes

Askar Gafurov	PhD student	k-mer based analysis

Adrián Goga	PhD student	data structures, nanopore data úrocessing

Tomáš Jarábek	PhD student	flow cytometry data processing

Lukáš Kiss	PhD student	proteome and transcriptome analysis

Alessia Petescia	PhD student	pangenome analysis

Jozef Sitarčík	PhD student	nanopore data processing

Matej Fedor	master student	nanopore data processing

Filip Kerák	master student	naural networks

Dávid Simeunovič	master student	sequence segmentation

Dominika Szabová	master student	gene clusters

[2009] [2012] [2014]

Alumni


Dominika Mihálová	master student 2021	Software for isometric gene tree reconciliation

Samuel Molčan	master student 2021	Modely na monitorovanie chronického ochorenia

Veronika Tordová	bachelor student 2021	Databáza variantov v genóme viniča

Tomáš Janeta	bachelor student 2021	Identifikácia sekvenčných variantov v kontexte neistoty

Eduard Batmendijn	master student 2020	Detection of Tandem Repeats in Nanopore Data

Adrián Goga	master student 2020	Identification of barcodes in nanopore sequencing data

Matúš Zeleňák	master student 2020	Hybrid Genome Assembly

Roman Beňo	bachelor student 2020	Alignment of Nanopore Reads to Graphs

Angelika Fedáková	bachelor student 2020	Využitie reťazcových grafov pri hľadaní chýb v genómoch

Andrej Korman	bachelor student 2020	Data Structures for Selective Sequencing

Radoslav Chládek	master student 2019	Algorithms for isometric gene tree reconciliation

Peter Koza	master student 2019	Infraštruktúra pre bioinformatické webové služby

Mário Lipovský	master student 2019	Solving the Maximum Clique Problem Using Neural Networks

Dominika Békesová	bachelor student 2019	Výpočtová analýza genómu kvasinky Magnusiomyces clavatus

Jaroslava Kokavcová	bachelor student 2019	Vizualizácia chromozomálnych zmien počas evolúcie

Samuel Molčan	bachelor student 2019	Identifikácia a analýza repetitívnych sekvencií v nanopórových dátach

Dominika Szabová	bachelor student 2019	Assembly and Analysis of Complex Gene Clusters

Kristína Váryová	bachelor student 2019	Gene expression analysis in the yeast Candida parapsilosis growing on different substrates

Jaroslav Budiš	doctoral student 2018	Novel Computational Approaches in DNA-Based Clinical Diagnostics

Askar Gafurov	master student 2018	Probabilistic Models for Genome Assembly with Chromatin Interaction Frequencies

Matej Krajčovič	master student 2018	Rekonštrukcia evolučných histórií s duplikáciami pomocou simulovaného žíhania

Werner Krampl	master student 2018	Prediction of Properties of Polymorphic Genomes from Sequencing Data

Rastislav Rabatin	master student 2018	Detecting Modified Bases in MinION Data

Dávid Barbora	bachelor student 2018	Multiple Alignment and Visualization of Nanopore Sequencing Signals

Eduard Batmendijn	bachelor student 2018	Identifikácia variantov v dátach nanopórového sekvenovania

Dominik Bujna	bachelor student 2018	Computational analysis of the genome of fungus Jaminaea angkorensis

Vladimír Boža	doctoral student 2017	Algorithms for high-throughput sequencing data

Marcel Schichman	master student 2017	Oprava chýb v dlhých čítaniach bez použitia zarovnávania

Jakub Havelka	bachelor student 2017	Alignment of Nanopore Sequencing Squiggles

Radoslav Chládek	bachelor student 2017	Vizualizácia evolučných histórií genómov s viacerými chromozómami

Mário Lipovský	bachelor student 2017	Approximate Abundance Histograms and Their Use for Genome Size Estimation

Matúš Zeleňák	bachelor student 2017	Sampling from MinION Reads

Ján Hozza	master student 2016	Rekonštrukcia histórií génových zhlukov

Jaroslav Petrucha	bachelor student 2016	Efektívna reprezentácia množiny krátkych reťazcov

Dávid Simeunovič	bachelor student 2016	Vizualizácia evolučných histórií

Rastislav Rabatin	bachelor student 2016	Alignment of Nanopore Sequencing Reads

Peter Koza	bachelor student 2016	Grafické prostredie na zobrazovanie a editovanie RNA motívov

Peter Kuljovský	bachelor student 2016	Efektívne vyhľadávanie krátkych reťazcov v dlhej sekvencii

Michal Nánási	doctoral student 2015	Decoding of Hidden Markov Models with Applications to Sequence Alignment

Marcel Schichman	bachelor student 2015	Zarovnávanie sekvenovacích dát s vysokým počtom chýb

Michal Sabo	master student 2015	Algorithms for Gene Tree Reconciliation

Jakub Jursa	master student 2015	Dátové štruktúry pre uchovávanie sekvenovacích dát

Martina Višňovská	doctoral student 2014	Alignments on Sequences with Internal Structure

Lukáš Bača	master student 2014	Trénovanie parametrov pre hľadanie génov s využitím externej informácie

Soňa Gibaštíková	master student 2014	Finding Conserved Gene Clusters in Duplicated Genomes

Albert Herencsár	master student 2014	An improved algorithm for ancestral gene order reconstruction

Michal Hozza	master student 2014	Zarovnávanie sekvencií s použitím metód klasifikácie

Andrej Ridzik	master student 2014	Algoritmy na rozpoznávanie neuropeptidov

Veronika Ženišová	master student 2014	Algoritmy na rekonštrukciu genómov pomocou preusporiadania

Michal Anderle	bachelor student 2014	Časovanie udalostí pri inferencii duplikačných histórií

Ján Hozza	bachelor student 2014	Rekonštrukcia duplikačných histórií pomocou pravdepodobnostného modelu

Petra Kubincová	bachelor student 2014	Mapping between Genomes

Martin Macko	doctoral student 2012	Algoritmus pre hľadanie vzdialených funkčných ortológov a jeho aplikácia na OB-fold doménu

Pavol Kmeč	master student 2013	Vykresľovanie RNA motívov

Martin Višňovec	master student 2013	Systém na hľadanie ortológov v príbuzných genómoch

Martin Bobák	master student 2013	Identifikácia variantov génov z dát sekvenovania novej generácie

Kubo Kováč	doctoral student 2013	Algorithms for Genome Rearrangements

Peter Kováč	master student 2012 Continued at MicroStep-MIS	Bioinformatics of Sequences with Repetitive Motifs

Ladislav Rampášek	master student 2012 Continued as doctoral student University of Toronto	Computational Complexity and Practical Implementation of RNA Motif Search

Jakub Kováč	bachelor student 2012 Continued as master student at Comenius University	Kompresia genómu za pomoci skrytých Markovovských modelov

Michal Petrucha	bachelor student 2012 Continued as master student at Comenius University	Data Structures for Whole-Genome Alignments

Martin Králik	master student 2011 Continued at Facebook	Pravdepodobnostné modely pre alternatívny zostrih génov

Martin Kravec	master student 2011 Continued as doctoral student in our group	MCMC algoritmus na rekonštrukciu duplikačných histórií

Marcel Kucharík	master student 2011 Continued as doctoral student Universität Wien	A New Algorithm for Using External Information in Gene Finding

Jaroslav Budiš	master student 2011 Continued as doctoral student in our group	Discovering motifs in mitochondrial DNA

Milan Mikula	bachelor student 2011 Continued as master student at Comenius University	Anotácia zhlukov génov

Andrej Ridzik	bachelor student 2011 Continued as master student in our group	Použitie komparatívnej informácie pri hľadaní génov

Michal Burger	master student 2010 Continued at Facebook	Atomization of DNA Sequences with Complex Evolutionary History

Peter Herman	bachelor student 2010 Continued as master student at Comenius University	Grafické prostredie na editovanie RNA motívov

Peter Kováč	bachelor student 2010 Continued as master student in the group	Implementácia externých zdrojov dát v hľadaní génov

Juraj Mešťánek	master student 2010 Continued in Adinis.sk	Software for Annotation of Protein Coding Genes in Yeast Mitochondrial Genomes

Michal Nánási	master student 2010 Continued as doctoral student in our group	Biological sequence annotation with hidden Markov models

Ladislav Rampášek	bachelor student 2010 Continued as master student in the group	RNA motif search in genomic sequences

Jakub Kováč	master student 2009 Continued as a doctoral student in our group	Gene Finding Using RT-PCR Tests

Rastislav Šrámek	master student 2007 Continued as doctoral student ETH Zürich	The On-line Viterbi Algorithm

Computational Biology @ Comenius University in Bratislava

People

Alumni

Computational Biology
@ Comenius University in Bratislava